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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889874 SRX5984177 SRR9213272 Feces C57BL/6 Taconic Biosciences Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 90724 9014

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 597 99.92

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
644.79 635.46 666.00 4.55 0.03 4.56 797

Rarefaction curve

Rank abundance curve

Bacterial Composition