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Projects

In this section, researchers can check the projects in the MMDB. It provides search services that show filtered entries based on the words typed in the search box. Each project page contains more specific metadata about the project and information about samples included in the project.

projects table image

Samples

In this section, researchers can check the samples in the MMDB. It provides search services that show filtered entries based on the words typed in the search box. Each sample page contains more specific metadata about the sample, diversity indices, and the bacterial composition visualized using Krona (Ondov et al., 2011). In addition, researchers can obtain the specific bacterial composition rates of samples in the descending order with the “Search for species or other taxa” service providing them with information about which mouse environment harbors the high level of the specific bacteria.

samples table image

Reference

Sivan, Ayelet, et al. "Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy." Science 350.6264 (2015): 1084-1089.

Yoon, Seok-Hwan, et al. "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies." International journal of systematic and evolutionary microbiology 67.5 (2017): 1613.

Ondov BD, Bergman NH, and Phillippy AM. Interactive metagenomic visualization in a Web browser. BMC Bioinformatics. 2011 Sep 30; 12(1):385.


MMDB TEAM

Junwon1,2

Jonghyun1,2

Sein1,2

Jon1,2,3

1Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 00826, Republic of Korea

2Institute of Molecular Biology and Genetics, Seoul National University, Seoul 00826, Republic of Korea

3School of Biological Sciences, Seoul National University, Seoul 00826, Republic of Korea