Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP200540 |
SRS4889861 |
SRX5984165 |
SRR9213284 |
Feces |
C57BL/6 |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
USA |
Female |
|
|
V4 |
|
|
50867 |
8127 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
356 |
99.88 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 404.96 |
404.83 |
422.35 |
3.47 |
0.06 |
3.48 |
494 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
