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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889807 SRX5984112 SRR9213337 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 48704 8450

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 310 99.87

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
355.86 351.11 372.00 2.72 0.12 2.73 450

Rarefaction curve

Rank abundance curve

Bacterial Composition