Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889806 SRX5984110 SRR9213339 Feces C57BL/6 The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 30908 8506

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 279 99.82

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
323.90 315.67 335.00 3.10 0.08 3.12 418

Rarefaction curve

Rank abundance curve

Bacterial Composition