Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889694 SRX5983998 SRR9213070 Feces C57BL/6 Taconic Biosciences Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 62992 9103

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 575 99.85

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
659.42 639.23 671.14 4.36 0.03 4.37 769

Rarefaction curve

Rank abundance curve

Bacterial Composition