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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889376 SRX5983680 SRR9212794 Feces C57BL/6 Taconic Biosciences Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 38563 9032

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 420 99.83

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
466.57 450.55 484.00 3.51 0.09 3.52 592

Rarefaction curve

Rank abundance curve

Bacterial Composition