Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889366 SRX5983671 SRR9212803 Cecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2017-12-05 USA NA Adult V4 59075 9776


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 613 99.86

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
672.69 660.16 693.00 4.88 0.02 4.88 901

Rarefaction curve

Rank abundance curve

Bacterial Composition