Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP200540 |
SRS4889343 |
SRX5983647 |
SRR9212827 |
Cecum |
Mus musculus domesticus |
Wild mouse |
Wild |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2017-12-05 |
USA |
NA |
|
Adult |
V4 |
|
|
37155 |
9699 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
524 |
99.72 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 627.14 |
637.96 |
690.77 |
4.75 |
0.02 |
4.76 |
797 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
