Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP200540 |
SRS4889327 |
SRX5983631 |
SRR9212843 |
Feces |
C57BL/6 |
Taconic Biosciences |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
USA |
Female |
|
|
V4 |
|
|
88589 |
9172 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
619 |
99.90 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 688.95 |
676.68 |
710.00 |
4.10 |
0.05 |
4.11 |
822 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
