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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP200540 SRS4889318 SRX5983622 SRR9212852 Feces C57BL/6 Taconic Biosciences Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 24305 8508

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 353 99.72

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
413.89 408.56 422.88 4.04 0.04 4.05 526

Rarefaction curve

Rank abundance curve

Bacterial Composition