Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP157514 SRS3667884 SRX4550778 SRR7691203 Feces C57BL/6 Charles River Laboratories Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 14 Adult V4 47970 9060

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 516 99.88

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
547.58 530.13 572.00 4.01 0.04 4.03 614

Rarefaction curve

Rank abundance curve

Bacterial Composition