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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP157514 SRS3667868 SRX4550762 SRR7691219 Feces C57BL/6 Charles River Laboratories Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male 11 Adult V4 51450 8640

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 553 99.92

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
574.82 560.30 595.00 4.43 0.02 4.44 634

Rarefaction curve

Rank abundance curve

Bacterial Composition