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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347386 SRX156518 SRR516666 Cecum WSB/EiJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female Adult V4 18853 9609

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 167 99.83

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
196.52 193.11 199.26 3.38 0.07 3.39 351

Rarefaction curve

Rank abundance curve

Bacterial Composition