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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347362 SRX156519 SRR516667 Cecum PWK/PhJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Male Adult V4 11897 8523

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 163 99.87

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
172.80 169.32 179.00 3.65 0.06 3.66 308

Rarefaction curve

Rank abundance curve

Bacterial Composition