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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347358 SRX156488 SRR516636 Cecum PWK/PhJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female Adult V4 16042 7435

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 167 99.94

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
171.22 171.00 176.00 4.08 0.03 4.08 262

Rarefaction curve

Rank abundance curve

Bacterial Composition