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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347345 SRX156437 SRR516585 Cecum NZO/HILtJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female Adult V4 13723 8455

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 208 99.82

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
223.28 223.79 233.00 3.47 0.09 3.48 336

Rarefaction curve

Rank abundance curve

Bacterial Composition