Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP012588 |
SRS347336 |
SRX156435 |
SRR516583 |
Cecum |
NOD/LtJ |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Female |
|
Adult |
V4 |
|
|
10528 |
8554 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
273 |
99.66 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 296.69 |
301.64 |
309.16 |
4.42 |
0.03 |
4.43 |
442 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
