Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347331 SRX156511 SRR516659 Cecum DBA/2JR The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Male V4 11921 7921


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 221 99.74

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
242.87 238.22 252.00 3.86 0.06 3.87 342

Rarefaction curve

Rank abundance curve

Bacterial Composition