Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347330 SRX156495 SRR516643 Cecum DBA/2JR The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Male V4 9423 8001


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 242 99.66

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
266.47 261.08 274.00 4.27 0.03 4.28 370

Rarefaction curve

Rank abundance curve

Bacterial Composition