Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347320 SRX156469 SRR516617 Cecum CAST/EiJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Female V4 5501 7726


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 159 99.55

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
173.51 180.43 184.09 3.64 0.06 3.66 242

Rarefaction curve

Rank abundance curve

Bacterial Composition