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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347317 SRX156460 SRR516608 Cecum CAST/EiJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female Adult V4 13153 7850

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 207 99.78

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
227.02 223.92 236.00 3.25 0.11 3.26 324

Rarefaction curve

Rank abundance curve

Bacterial Composition