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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347316 SRX156465 SRR516613 Cecum CAST/EiJ The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
Female Adult V4 18205 8310

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 244 99.83

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
267.37 268.47 275.00 3.89 0.06 3.90 379

Rarefaction curve

Rank abundance curve

Bacterial Composition