Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP012588 |
SRS347316 |
SRX156465 |
SRR516613 |
Cecum |
CAST/EiJ |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
|
Female |
|
Adult |
V4 |
|
|
18205 |
8310 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
244 |
99.83 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 267.37 |
268.47 |
275.00 |
3.89 |
0.06 |
3.90 |
379 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
