Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP012588 |
SRS347314 |
SRX156494 |
SRR516642 |
Cecum |
C3H/Ri |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
USA |
Male |
|
|
V4 |
|
|
13872 |
8290 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
213 |
99.76 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 236.26 |
230.60 |
246.00 |
2.88 |
0.23 |
2.89 |
351 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
