Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347314 SRX156494 SRR516642 Cecum C3H/Ri The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Male V4 13872 8290


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 213 99.76

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
236.26 230.60 246.00 2.88 0.23 2.89 351

Rarefaction curve

Rank abundance curve

Bacterial Composition