Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP012588 |
SRS347313 |
SRX156492 |
SRR516640 |
Cecum |
C3H/Ri |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
USA |
Male |
|
|
V4 |
|
|
13285 |
8399 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
231 |
99.86 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 241.40 |
237.33 |
250.00 |
4.02 |
0.04 |
4.03 |
372 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
