Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347312 SRX156493 SRR516641 Cecum C3H/Ri The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Male V4 8144 8200


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 204 99.67

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
218.88 218.63 231.00 3.73 0.06 3.75 333

Rarefaction curve

Rank abundance curve

Bacterial Composition