Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP012588 |
SRS347307 |
SRX156499 |
SRR516647 |
Cecum |
C3H/Ri |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
|
USA |
Female |
|
|
V4 |
|
|
9400 |
8178 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
192 |
99.79 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 202.55 |
200.64 |
212.00 |
3.86 |
0.05 |
3.87 |
302 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
