Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP012588 SRS347293 SRX156456 SRR516604 Cecum A/J The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
USA Male V4 9653 7868


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 200 99.76

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
213.99 212.05 223.00 3.50 0.12 3.52 321

Rarefaction curve

Rank abundance curve

Bacterial Composition