Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290239 SRX2924751 SRR5690813 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2014-11-29 USA NA Adult V4 13530 9142


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 418 99.48

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
469.23 448.57 488.00 4.14 0.05 4.17 588

Rarefaction curve

Rank abundance curve

Bacterial Composition