Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290238 SRX2924748 SRR5690816 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-10-09 USA NA Adult V4 27516 10139


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 464 99.75

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
505.75 485.70 532.00 3.39 0.09 3.42 558

Rarefaction curve

Rank abundance curve

Bacterial Composition