Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290237 SRX2924749 SRR5690815 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2014-11-18 USA NA Adult V4 12218 9270


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 302 99.59

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
334.89 327.52 352.00 3.61 0.07 3.63 464

Rarefaction curve

Rank abundance curve

Bacterial Composition