Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290234 SRX2924747 SRR5690817 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-10-13 USA NA Adult V4 24492 9561


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 584 99.69

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
628.61 603.13 660.00 4.47 0.03 4.50 674

Rarefaction curve

Rank abundance curve

Bacterial Composition