Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP109346 |
SRS2290217 |
SRX2924728 |
SRR5690836 |
Ileocecum |
Mus musculus domesticus |
Wild mouse |
Wild |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2014-11-22 |
USA |
NA |
|
Adult |
V4 |
|
|
17294 |
9115 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
400 |
99.69 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 433.21 |
415.55 |
454.00 |
3.86 |
0.07 |
3.89 |
523 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
