Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290205 SRX2924716 SRR5690848 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-10-14 USA NA Adult V4 37196 9637


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 569 99.84

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
600.87 585.64 630.00 4.51 0.03 4.53 751

Rarefaction curve

Rank abundance curve

Bacterial Composition