Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP109346 |
SRS2290203 |
SRX2924714 |
SRR5690850 |
Ileocecum |
Mus musculus domesticus |
Wild mouse |
Wild |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2015-10-15 |
USA |
NA |
|
Adult |
V4 |
|
|
38831 |
9506 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
441 |
99.79 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 515.77 |
499.52 |
521.71 |
4.24 |
0.03 |
4.25 |
663 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
