Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290201 SRX2924715 SRR5690849 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-10-16 USA NA Adult V4 39134 9850


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 709 99.81

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
748.69 722.74 784.00 4.45 0.03 4.47 723

Rarefaction curve

Rank abundance curve

Bacterial Composition