Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290198 SRX2924710 SRR5690854 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2015-10-22 USA NA Adult V4 28882 9720


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 571 99.73

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
618.41 592.30 649.00 4.01 0.04 4.04 674

Rarefaction curve

Rank abundance curve

Bacterial Composition