Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290159 SRX2924670 SRR5690894 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2014-11-21 USA NA Adult V4 14683 9494


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 561 99.60

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
593.82 574.06 620.00 4.66 0.02 4.71 713

Rarefaction curve

Rank abundance curve

Bacterial Composition