Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP109346 |
SRS2290082 |
SRX2924593 |
SRR5690971 |
Ileocecum |
Mus musculus domesticus |
Wild mouse |
Wild |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2014-10-12 |
USA |
NA |
|
Adult |
V4 |
|
|
15197 |
8674 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
336 |
99.68 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 364.31 |
351.04 |
384.00 |
3.76 |
0.06 |
3.79 |
425 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
