Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290076 SRX2924590 SRR5690974 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2014-10-10 USA NA Adult V4 40894 9516


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 693 99.82

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
732.77 709.04 768.00 4.47 0.03 4.49 720

Rarefaction curve

Rank abundance curve

Bacterial Composition