Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP109346 SRS2290016 SRX2924526 SRR5691038 Ileocecum Mus musculus domesticus Wild mouse Wild
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2014-11-11 USA NA Adult V4 12745 9876


Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 421 99.52

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
456.82 442.03 482.00 4.37 0.03 4.41 595

Rarefaction curve

Rank abundance curve

Bacterial Composition