Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876942 |
SRX959640 |
SRR1919365 |
Feces |
A/J |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-04-10 |
USA |
Female |
3 |
Juveniles |
V4 |
|
|
82532 |
8980 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
821 |
99.90 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 863.37 |
834.24 |
904.00 |
4.07 |
0.05 |
4.09 |
681 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
