Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876930 |
SRX959653 |
SRR1919378 |
Feces |
C57BL/6 |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-04-10 |
USA |
Female |
3 |
Juveniles |
V4 |
|
|
13286 |
7768 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
245 |
99.56 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 293.80 |
300.19 |
328.56 |
3.43 |
0.06 |
3.45 |
368 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
