Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876927 |
SRX959657 |
SRR1919382 |
Feces |
C57BL/6 |
Envigo |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-04-10 |
USA |
Female |
3 |
Juveniles |
V4 |
|
|
82949 |
9345 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
1010 |
99.92 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 1039.25 |
1017.03 |
1073.00 |
4.90 |
0.02 |
4.92 |
843 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
