Loading...

Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876919 SRX959666 SRR1919391 Feces A/J Envigo Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-04-10 USA Female 3 Juveniles V4 84262 9195

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 806 99.92

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
838.74 815.33 872.00 4.19 0.04 4.21 713

Rarefaction curve

Rank abundance curve

Bacterial Composition