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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876889 SRX959693 SRR1919418 Feces BALB/c The Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-08 USA Female 7 Juveniles V4 83655 7898

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 627 99.93

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
657.34 636.41 687.00 2.62 0.19 2.64 507

Rarefaction curve

Rank abundance curve

Bacterial Composition