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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876884 SRX959701 SRR1919426 Feces C57BL/6 Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-08 USA Female 7 Juveniles V4 82687 8168

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 519 99.92

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
556.67 534.35 586.00 2.83 0.12 2.84 459

Rarefaction curve

Rank abundance curve

Bacterial Composition