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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876880 SRX959706 SRR1919431 Feces C57BL/6 Harlan Sprague Dawley Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-08 USA Female 7 Juveniles V4 78417 9074

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 995 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
1028.77 1004.16 1068.00 4.04 0.05 4.06 692

Rarefaction curve

Rank abundance curve

Bacterial Composition