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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876877 SRX959703 SRR1919428 Feces C57BL/6 Harlan Sprague Dawley Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-08 USA Female 7 Juveniles V4 81483 9170

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 1098 99.91

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
1135.35 1107.25 1173.00 4.78 0.02 4.80 854

Rarefaction curve

Rank abundance curve

Bacterial Composition