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Summary

Project accession Sample accession Experiment accession Run accession Sampling location Genotype Vendor Origin
SRP056326 SRS876873 SRX959709 SRR1919434 Feces A/J Jackson Laboratory Laboratory
Collection date Country Sex Age Life stage Region Metadata Comment #Valid reads #kegg id
2013-05-08 USA Female 7 Juveniles V4 85481 8540

OTU-picking

Method Cutoff No. of OTUs found in the sample Good's coverage of library(%)
CL_OPEN_REF_UCLUST_MC2 0.97 716 99.93

Diversity indices

ACE Chao1 Jackknife Shannon Simpson NPShannon Phylogenetic diversity
747.48 724.62 780.00 3.75 0.06 3.77 488

Rarefaction curve

Rank abundance curve

Bacterial Composition