Summary
| Project accession |
Sample accession |
Experiment accession |
Run accession |
Sampling location |
Genotype |
Vendor |
Origin |
| SRP056326 |
SRS876873 |
SRX959709 |
SRR1919434 |
Feces |
A/J |
The Jackson Laboratory |
Laboratory |
| Collection date |
Country |
Sex |
Age |
Life stage |
Region |
Metadata |
Comment |
#Valid reads |
#kegg id |
| 2013-05-08 |
USA |
Female |
7 |
Juveniles |
V4 |
|
|
85481 |
8540 |
OTU-picking
| Method |
Cutoff |
No. of OTUs found in the sample |
Good's coverage of library(%) |
| CL_OPEN_REF_UCLUST_MC2 |
0.97 |
716 |
99.93 |
Diversity indices
| ACE |
Chao1 |
Jackknife |
Shannon |
Simpson |
NPShannon |
Phylogenetic diversity |
| 747.48 |
724.62 |
780.00 |
3.75 |
0.06 |
3.77 |
488 |
Rarefaction curve
Rank abundance curve
Bacterial Composition
